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Herbsprout is a webblog and podcast dedicated to sharing the health benefits of herbs, food, innovations related to our gut microbiome. Herbsprout seeks to bridge the vast chasm dividing the mainstream medical community and alternative medicine.

Using Classic models (Lotka-Volterra) to do microbiome research

10月

25日

スレッド

Using Classic models (Lotka-Vo...

What is Lotka-Volterra modeling? It is the simple model of the population dynamics of species competing for common resource, according to Wikipedia. Because there are trillions of microbes in our bodies, it becomes a huge challenge collecting, breaking down, processing, packaging, then accurately making sense of the data in presentable formats. Thanks to computing, high throughput DNA sequencing enables the exploration of dynamics in microbial populations. Mathematical modeling and simulation of such microbiome time series data can help in getting better understanding of bacterial communities.

Researchers today are able to use an "interactive platform for generalized Lotka-Volterra (gLV) based modeling and simulation of microbial populations. The tool can be used to generate the mathematical models with automatic estimation of parameters and use them to predict future trajectories using numerical simulations", according to a February 22, 2019 Frontierso India report (see https://www.frontiersin.org/articles/10.3389/fmicb.2019.00288/full).

"We have developed “Web-gLV” to bridge data delivery gaps to enable biologists to take advantage of the multispecies modeling and simulation without any programming expertise," adds the report. This way, scientists can focus on the Science and rely on the "Web-glv" for the computing and delivery.

#ai #artificialintelligence #bacteria #datascience #gutmicrobiome #health #healthinnovation #healthtech #machinelearning #mindbody

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By HerbSprout.com

https://herbsprout.home.blog/ HERBSPROUT ADVISORY BOARD: ___________________________

●Jenny Pandol, Co-owner/founder/ COO, Microbiome Learning Center;
●Dr. Sabine Hazan, Founder and CEO, Progenabiome and Ventura Clinical Trials;
●Naveen Jain, Founder & CEO, Viome
●Hans Parge, ex-Pfizer director;
●Rob Greenlee, VP, Libsyn;
___________________________

●Cindy Postma, essential oils;
●Chris Kenji Beer, herbs & microbiome;
●Ely Diana, translation/ support services.
___________________________

Cindy Postma has been a writer and editor across all disciplines. She has been an instructor of Asian studies at Kings College (Cambridge), Columbia, and Cornell. She received her PhD from Kyoto University, Masters from Columbia University, and undergraduate from The University of Washington. She is proficient in four Asian languages and French. ____________________________

I am Chris Kenji Beer, Herbsprout writer and editor. I come from a family of health nuts. My mom was a psyche major and shared her Japanese culinary tradition. Uncle Tetsuo was and cousin Satoru Harada is a surgeon. Aunt Shigeko was a dietitian in Hiroshima before complications from the nuclear fallout took her life. I am currently enrolled at Bastyr University's Ayurvedic Health Advisor program. In the past, I spent many years researching health care. I was published on the topic "Japanese Health Care for the Elderly" by the U.S. - Japan Foundation, and as co-author of health care reports for National Conference of State Legislatures Health Services Program, NW Asian Weekly, & as Editor/ co-Publisher of Asia Pacific Economic Review. Email us with questions or comments @ sales@mzinger.com. ____________________________

The contents of this webblog is not intended to be used to treat, cure, mitigate, or diagnose any medical condition. The readers must consult your doctor before you make any changes that could affect your health.

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